Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMTLKVAIGPQNAFVLRQGIRREYVLVIVALCGIADGALIAAGVGGFAALIHAHPNMTLVARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQMCLVVTFLNPHVYLDTVVLIGALANEESDLRWFFGAGAWAASVVWFAVLGFSAGRLQPFFATPAAWRILDALVAVTMIGVAVVVLVTSPSVPTANVALII |
| 2N28 Chain:A ((15-44)) | ------------------------------------------------------------------------------------------------------------------------------------------IIIAIVVW----SIVIIEYRKILRQRKIDRLIDR----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2N28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5900 for 117 contacts (-50.4/contact) +
2D Compatibility (PS) -2815 + (NN) -60 + (LL) 14920
1D Compatibility (HY) -3600 + (ID) 300
Total energy: 2245.0 ( 19.19 by residue)
QMean score : -0.281
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