Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYRVEADRDLCQGHAMCELEAPEYFRVPKRG----QVEILDPEPPEEARGVIKHAVWACPTQALSIRETGE
4DHV Chain:B ((1-65))
-AWKVSVDQDTCIGCAICA-LCPDVFEMNDEGKAQPKVEVIE---DEELYNCAKEAMEACPVSAITIEE---
General information:
TITO was launched using:
RESULT:
Template:
4DHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34729 for 379 contacts (-91.6/contact) +
2D Compatibility (PS) -6253 + (NN) -2214 + (LL) 192
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -49304.0 ( -130.09 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4DHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DHV-query.scw
PDB file :
Tito_Scwrl_4DHV.pdb
: