Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
4LDZ Chain:A ((6-196))
--------ISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELK--DTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMEDLYSE----ANP----LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRS-------
General information:
TITO was launched using:
RESULT:
Template:
4LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122884 for 1468 contacts (-83.7/contact) +
2D Compatibility (PS) -20546 + (NN) -10233 + (LL) 1888
1D Compatibility (HY) -16800 + (ID) 2850
Total energy: -171425.0 ( -116.77 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDZ-query.scw
PDB file :
Tito_Scwrl_4LDZ.pdb
: