Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCV--DVMKQISAVQSSLERANRVMLHNHLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM
3ZGD Chain:A ((167-250))
----------AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCI---YAAGGYDGQDQLNSVERYDVATATWTFVAP------------------------
General information:
TITO was launched using:
RESULT:
Template:
3ZGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9955 for 563 contacts (-17.7/contact) +
2D Compatibility (PS) -8355 + (NN) 5372 + (LL) 2164
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -13924.0 ( -24.73 by residue)
QMean score : -0.042
(partial model without unconserved sides chains):
PDB file :
Tito_3ZGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZGD-query.scw
PDB file :
Tito_Scwrl_3ZGD.pdb
: