Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
3TD2 Chain:A ((1-187))
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNR----
General information:
TITO was launched using:
RESULT:
Template:
3TD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105949 for 1577 contacts (-67.2/contact) +
2D Compatibility (PS) -19757 + (NN) -4917 + (LL) 536
1D Compatibility (HY) -22400 + (ID) 9350
Total energy: -161837.0 ( -102.62 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3TD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD2-query.scw
PDB file :
Tito_Scwrl_3TD2.pdb
: