Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEVS-VITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPY-TDALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1M2N Chain:A ((15-240))
--LVALTGAGVSAESGIPTFRG-KDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPL------PKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV-----
General information:
TITO was launched using:
RESULT:
Template:
1M2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103122 for 1860 contacts (-55.4/contact) +
2D Compatibility (PS) -24215 + (NN) -14144 + (LL) 1260
1D Compatibility (HY) -17600 + (ID) 5300
Total energy: -163121.0 ( -87.70 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1M2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2N-query.scw
PDB file :
Tito_Scwrl_1M2N.pdb
: