Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGWFAHTLRPAMLAAGRSDRLGRIVERSPLTRGVVRRFVPGDTLDDVVDIVTALRDSGRYLSIDYLGENVTDADDAAAAVRAYLGLLDVL-----------GRRGDIACD-GVRP-LEVSLKLSAL---GQALDRDGQKIA-LDNARAICERAERVGAWVTVDAEDHTTTDSTLSISGDLRV---DFPWLGTVVQAYLRRTLADCAELAA------VGARVRLCKGAYDEPASVAYRD----------AAQVTDSYLRCLRVLTAGRG--YPMVATHDPVIIAAVPGITRESGRSQGDFEYQMLYGVRDDEQRRLTGAGNHVRVYVPFGTR--WYGYFLRRLAERPANLAFFLRALTDRRRARGCAER |
| 4NMD Chain:A ((116-446)) | ----------------------------------MARQFIVGETTKEAVKNLEKLRKDGFAAVVDVLGEATLSEEEAEVYTNTYLELLEALKKEQGSWKGLPGKGGDPGLDWGHAPKVNIAVKPTALFCLANPQDFEGSVVAILDRMRRIFKKVMELNGFLCIDMESYRHKEIILEVFRRLKLEYRDYPHLGIVLQAYLKDNDKDLDDLLAWAKEHKVQISVRLVKGAYWDYETVKAKQNDWEVPVWTIKAESDAAYERQARKILENHQICHFACASHNIRTISAVMEMARELNVPEDRYEFQVLYGMAEPVRKGILKVAGRIRLYAPYGNMVPGMGYLVRRLLENTANESFLRQSFAE---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152936 for 2257 contacts (-67.8/contact) +
2D Compatibility (PS) -31224 + (NN) -9735 + (LL) 3052
1D Compatibility (HY) -16400 + (ID) 4400
Total energy: -211643.0 ( -93.77 by residue)
QMean score : 0.397
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