Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALAL--GHPDTQ-ITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPD---GDVLWRPGGDRTAS
1RTY Chain:A ((22-178))
---------------------------KDSLRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLA--IVT-----DYKLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSEEIHETVL--RYLNRLSDYFFAGARVVNARSGIGDVEY---------
General information:
TITO was launched using:
RESULT:
Template:
1RTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95354 for 1154 contacts (-82.6/contact) +
2D Compatibility (PS) -16135 + (NN) -8401 + (LL) 1012
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -134278.0 ( -116.36 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1RTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTY-query.scw
PDB file :
Tito_Scwrl_1RTY.pdb
: