Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFA-AARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRI---FEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFW Chain:A ((27-277))
------PIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLL---DYFNLSNSPQNGRTLCQFYTTGSAKLFEEIAEDWLG---------------
General information:
TITO was launched using:
RESULT:
Template:
2JFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -227041 for 2189 contacts (-103.7/contact) +
2D Compatibility (PS) -27374 + (NN) -14386 + (LL) 1112
1D Compatibility (HY) -24000 + (ID) 5200
Total energy: -296889.0 ( -135.63 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_2JFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFW-query.scw
PDB file :
Tito_Scwrl_2JFW.pdb
: