Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLE--ATEVA--AKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI
2UVD Chain:A ((1-243))
---MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD--AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGG---
General information:
TITO was launched using:
RESULT:
Template:
2UVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141195 for 2110 contacts (-66.9/contact) +
2D Compatibility (PS) -25242 + (NN) -1195 + (LL) 876
1D Compatibility (HY) -16800 + (ID) 5250
Total energy: -188806.0 ( -89.48 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2UVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVD-query.scw
PDB file :
Tito_Scwrl_2UVD.pdb
: