Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGANHVRNDPIMARLTVITTGGTISTTAGPDGVLRPTHCGATLIAGLDMDSDIEVVDLMALDSSKLTPADWDRIGAAVQEAFRGGADGVVITHGTDTLEETALWLDLTYAGSRPVVLTGAMLSADAPGADGPANLRDALAVAADPAARDLGVLVSFGGRVLQPLGLHKVANPDLCGFAGESLG----FTSGGVRLTRTKTRPYLGDLGAAVA-----PRVDIVAVYPGSDAVAMDACVAAGARAVVLEALGSGNAGAAVIEGVRRHCRDGSDPVVIAVSTRVAGARVGAGYGPGH-DLVEAGAVMVPRLPPSQARVLLMAALAANSPVADVIDRWG |
1NNS Chain:A ((81-310)) | --------------------------------------------------------------------------------------DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGT---AVVRSSRVP---TGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLAL-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NNS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156442 for 1771 contacts (-88.3/contact) +
2D Compatibility (PS) -24735 + (NN) -17223 + (LL) 5332
1D Compatibility (HY) -11200 + (ID) 4150
Total energy: -208418.0 ( -117.68 by residue)
QMean score : 0.491
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