Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV
2GKN Chain:A ((2-128))
-GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKVVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTS--------
General information:
TITO was launched using:
RESULT:
Template:
2GKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92910 for 857 contacts (-108.4/contact) +
2D Compatibility (PS) -13816 + (NN) -7645 + (LL) 412
1D Compatibility (HY) -17600 + (ID) 6300
Total energy: -137859.0 ( -160.86 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2GKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GKN-query.scw
PDB file :
Tito_Scwrl_2GKN.pdb
: