Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5P Chain:A ((6-118))
------------------------------GTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP-----
General information:
TITO was launched using:
RESULT:
Template:
3R5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57302 for 796 contacts (-72.0/contact) +
2D Compatibility (PS) -12353 + (NN) -5310 + (LL) 816
1D Compatibility (HY) -7200 + (ID) 2400
Total energy: -83749.0 ( -105.21 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3R5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5P-query.scw
PDB file :
Tito_Scwrl_3R5P.pdb
: