Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRL-----------AESTIKRLTGGDT-IRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI-RVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD |
| 1SVM Chain:A ((167-299)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--D---RLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQ-IFPPGIVTMNE-YSV---PKTLQARFVKQIDFRP--------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25780 for 864 contacts (-29.8/contact) +
2D Compatibility (PS) -12363 + (NN) 74 + (LL) 21260
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -18709.0 ( -21.65 by residue)
QMean score : 0.178
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