Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
2X30 Chain:A ((1-239))
MSKLELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVR----GTTLRGNGWTRDGGDLYETLDRLNKEGCARYVVTDIA-------PNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT--
General information:
TITO was launched using:
RESULT:
Template:
2X30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163136 for 1976 contacts (-82.6/contact) +
2D Compatibility (PS) -25174 + (NN) -10658 + (LL) -116
1D Compatibility (HY) -26000 + (ID) 7900
Total energy: -232984.0 ( -117.91 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_2X30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X30-query.scw
PDB file :
Tito_Scwrl_2X30.pdb
: