Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPA-VSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
4R4G Chain:A ((11-115))
----------------------------------SSDIAQVKIKD------VSYTLPSKYDKST-----SDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPE-DYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPE---------
General information:
TITO was launched using:
RESULT:
Template:
4R4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10554 for 707 contacts (-14.9/contact) +
2D Compatibility (PS) -11287 + (NN) -5430 + (LL) 6080
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -23741.0 ( -33.58 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_4R4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R4G-query.scw
PDB file :
Tito_Scwrl_4R4G.pdb
: