Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDYLRDAAEIYRRSFAVIRAEADLARFPADVARVVVRLIHTCGQVDVAEHVAYTDDVVARAGAALAAGAPVLCDSSMVAAGITTSRLPADN-QIVSLVADPRATELAARRQTTRSAAGVELCA--ERLPGAVLAIGNAPTALFRLLELVDEGAPPPAAVLGGPVGFVGSAQAKEELIE----RPRGMSYLVVRGRRGGSAMAAAAVNAIASDRE
2AFR Chain:A ((14-213))
----------IENKSFSIIDEEAGPHSFAQEEWEVVRRIIHATADFDYKNITKIHPQAIDSGIQALKKGCPIVCDVQMILSGLNPERLKVYGCKTYCFISDEDVIENAKRKNSTRAIESIQKANSFNLLNESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKGGSTIAVAILHAL-----
General information:
TITO was launched using:
RESULT:
Template:
2AFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145071 for 1626 contacts (-89.2/contact) +
2D Compatibility (PS) -21629 + (NN) -13061 + (LL) 1236
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -195425.0 ( -120.19 by residue)
QMean score : 0.701
(partial model without unconserved sides chains):
PDB file :
Tito_2AFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AFR-query.scw
PDB file :
Tito_Scwrl_2AFR.pdb
: