Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLLADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV
4H0U Chain:A ((5-264))
-TPYEDLLRKIAEEGSHKD----TGTTSLFGQQIRFDLNEGFPLLTTKKVHFHSVVGELLWFLQGDSNVKWLQDNNIRIWNEWADEDGELGPVYGVQWRSWPTPDGRHIDQISGALETLRNNPDSRRNIVSAWNVSELENMALPPCHLLFQLYVADGKLSCQLYQRSADMFLGVPFNIASYALLTHMFAQQAGLEVGEFIWTGGDCHIYDNHKEQVAEQLSREARPYPTLELNKAASMFEYSFDDITVSGYDPHPLIRGKV--
General information:
TITO was launched using:
RESULT:
Template:
4H0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198148 for 1995 contacts (-99.3/contact) +
2D Compatibility (PS) -27734 + (NN) -15876 + (LL) 448
1D Compatibility (HY) -31200 + (ID) 9300
Total energy: -281810.0 ( -141.26 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_4H0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H0U-query.scw
PDB file :
Tito_Scwrl_4H0U.pdb
: