Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVG---TRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
2LTC Chain:A ((527-632))
--------------------------------------------------------------------------------------LTETLNREGVYTVFAPTNEAFRALPPREWSRLLGDAKELANILKYH-IGDEILVSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNGVVHVITNVL----
General information:
TITO was launched using:
RESULT:
Template:
2LTC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58255 for 694 contacts (-83.9/contact) +
2D Compatibility (PS) -10942 + (NN) 398 + (LL) 5104
1D Compatibility (HY) -8400 + (ID) 1800
Total energy: -73895.0 ( -106.48 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_2LTC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTC-query.scw
PDB file :
Tito_Scwrl_2LTC.pdb
: