Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVA--AANPAVTFVGIATRAD-VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGT--STFVNNPTAAMSQDELSGRVAALTS
2L5O Chain:A ((8-124))
-------------------------------------------FSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEP------------------
General information:
TITO was launched using:
RESULT:
Template:
2L5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86667 for 821 contacts (-105.6/contact) +
2D Compatibility (PS) -12496 + (NN) -9179 + (LL) 5772
1D Compatibility (HY) -9200 + (ID) 1700
Total energy: -113470.0 ( -138.21 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2L5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L5O-query.scw
PDB file :
Tito_Scwrl_2L5O.pdb
: