Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLQRGAGQYFAGKRCFVTGAASGIGRATALRLAAQGAELYLTDRDRDGLAQTVCDARALGAQVPEHR-VLDVSDYQDVAAFAADIHARHPSMDVVL-NIAGVSAWGTVDQLTHDQWSRMVAINLMGPIHVIETLVPPMVAAGRGGHLVNVSSAAGLVGLPWHAAYSASKYGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDRDDPRVNRWVERFSGHAVTPEKAADKILAGVTRNRYLVYTSADIRALYAFKRYAWWPYTLVMRRVNVFFTRALRPGP |
4Y9D Chain:A ((4-255)) | ---------FQDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVRAEAVEKAVAELEGLG--ITAHGIVLDIMDREAYARAADEVEAVFGQAPTLLSNTAGVNSFGPIEKTTYDDFDWIIGVNLNGVINGMVTFVPRMIASGRPGHIVTVSSLGGFMGSALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANI-----------------------------HGLEPEKLAEAIKKGVEDNALYIIPYPEVR-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Y9D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136341 for 1845 contacts (-73.9/contact) +
2D Compatibility (PS) -22631 + (NN) -4060 + (LL) 5256
1D Compatibility (HY) -14400 + (ID) 3700
Total energy: -175876.0 ( -95.33 by residue)
QMean score : 0.579
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