Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
1N5J Chain:A ((1-208))
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLA------
General information:
TITO was launched using:
RESULT:
Template:
1N5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111508 for 1741 contacts (-64.0/contact) +
2D Compatibility (PS) -23698 + (NN) -17706 + (LL) -332
1D Compatibility (HY) -24400 + (ID) 10400
Total energy: -188044.0 ( -108.01 by residue)
QMean score : 0.889
(partial model without unconserved sides chains):
PDB file :
Tito_1N5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5J-query.scw
PDB file :
Tito_Scwrl_1N5J.pdb
: