Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
4XNW Chain:A ((248-299))
----KKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE----
General information:
TITO was launched using:
RESULT:
Template:
4XNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14400 for 306 contacts (-47.1/contact) +
2D Compatibility (PS) -5498 + (NN) -4637 + (LL) 552
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -28433.0 ( -92.92 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4XNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XNW-query.scw
PDB file :
Tito_Scwrl_4XNW.pdb
: