Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGS-----VFVACRLRPLTLDDVDFTLAVLGGNDLRGL-----NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YCQ Chain:A ((52-234))
--------LTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA--
General information:
TITO was launched using:
RESULT:
Template:
4YCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159125 for 1499 contacts (-106.2/contact) +
2D Compatibility (PS) -17555 + (NN) 2729 + (LL) 536
1D Compatibility (HY) -7200 + (ID) 4200
Total energy: -184815.0 ( -123.29 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4YCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YCQ-query.scw
PDB file :
Tito_Scwrl_4YCQ.pdb
: