Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
4XLS Chain:M ((4-157))
--FRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEE------
General information:
TITO was launched using:
RESULT:
Template:
4XLS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48736 for 1055 contacts (-46.2/contact) +
2D Compatibility (PS) -17184 + (NN) -7954 + (LL) 1184
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -82290.0 ( -78.00 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_4XLS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XLS-query.scw
PDB file :
Tito_Scwrl_4XLS.pdb
: