Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVK------VEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
4YPH Chain:A ((39-236))
---------------------------------------PYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVT-DDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEEL--------------------
General information:
TITO was launched using:
RESULT:
Template:
4YPH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105536 for 1424 contacts (-74.1/contact) +
2D Compatibility (PS) -19413 + (NN) -12188 + (LL) 5216
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -147371.0 ( -103.49 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4YPH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YPH-query.scw
PDB file :
Tito_Scwrl_4YPH.pdb
: