Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPAPPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKI--IDVTPGRLQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIFSADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYS-DRPGTVVVGSIKDVPMEDPILTGVAHDRSEAKVTIV--GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS-RDVGPAAVEKLDSLRNEIG---FSQLLYDDHIGK----VSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLGGDEEATVYAGTGR |
| 2HMF Chain:A ((118-466)) | --------------------------------------------------------------PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKE-RLLPLLKEGIIPVVTGFIGTTEEGY-ITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT---NDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS-----ETNISLVVSEEDVDKA----LKALKREFGDFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220329 for 2658 contacts (-82.9/contact) +
2D Compatibility (PS) -36295 + (NN) -15610 + (LL) 5244
1D Compatibility (HY) -30400 + (ID) 6000
Total energy: -303390.0 ( -114.14 by residue)
QMean score : 0.525
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