Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
4POB Chain:A ((12-117))
------HATVTVTDDSFQEDVVSSNKPVLVDFWATWCGPCKMVAPVLEEIAKDHGEALTIAKLDVDANPETARAFQVTSIPTLILFQNGEATKRIVGAKSKSALLRELDGVV----
General information:
TITO was launched using:
RESULT:
Template:
4POB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78332 for 790 contacts (-99.2/contact) +
2D Compatibility (PS) -11433 + (NN) -2842 + (LL) 200
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -110007.0 ( -139.25 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_4POB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POB-query.scw
PDB file :
Tito_Scwrl_4POB.pdb
: