Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSD-GFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
3EER Chain:A ((51-145))
-----------------------------------------------------TNPEQLFAVGYAACFSNAILHVAREAKVALKEAPVTATVGIGPNGQGGFALS---VALAAHIALEDEQA-RQLVTVAHQVCPYSNAVRGNIDVQVSVNG
General information:
TITO was launched using:
RESULT:
Template:
3EER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52242 for 663 contacts (-78.8/contact) +
2D Compatibility (PS) -10185 + (NN) -3623 + (LL) 1576
1D Compatibility (HY) -6000 + (ID) 1450
Total energy: -71924.0 ( -108.48 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3EER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EER-query.scw
PDB file :
Tito_Scwrl_3EER.pdb
: