Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDH---GPAARMPAGNSVLNYGLPALAGHTASSVD-VHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVRVAQGERRRT
4EDT Chain:A ((197-280))
----------------------------------------------------NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQL
General information:
TITO was launched using:
RESULT:
Template:
4EDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6631 for 475 contacts (-14.0/contact) +
2D Compatibility (PS) -8070 + (NN) 1951 + (LL) 4580
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -14120.0 ( -29.73 by residue)
QMean score : 0.058
(partial model without unconserved sides chains):
PDB file :
Tito_4EDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDT-query.scw
PDB file :
Tito_Scwrl_4EDT.pdb
: