Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKKLSPIFSNITGVVRYQDLAYVASVSDEIQEQNIAHSYVTEWDCGTWCVAGEDDDMLPWEIVSATVVHEPVEQALFLGARGQVFCMG-SGDIHEEQLPDGDDAIGGRGNMRGVACI-DGVAYACGMDRQVYRRFD-ENDWRAIDTGARPPAGSEAVVGFEAIGGFGAREIYAVGWDGEIWQYD--GK-RWQPRESPTNLILTAICCAEDGSVYACGQAGTLLR-G-R-NDHWEIIAQDDV--DEDLWSLAWF-DGALYVSSA-TAVYTLVG--GHLKEVDFGDEQPQRCFHLS-AADGVLWSIAAKDI-FSFDGQQWTRID |
2XBG Chain:A ((109-340)) | ------------------------------------------------------------------------GNEGWIVGEPPIMLHTTDGGQSWSQ-IPLDP---KLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIG--------VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVTDLTAA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104995 for 1552 contacts (-67.7/contact) +
2D Compatibility (PS) -23454 + (NN) -11051 + (LL) 6432
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -143468.0 ( -92.44 by residue)
QMean score : 0.283
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