Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVDGFVQPVGEGLADQLVGHQVGYGGVQWDQCLAEVGDVAVVHFFHQAVRQVGFVEQGVEAVVAGEQRRRGEEELLGDLQHRLDPFLDAGFAGHAVGGVEQVRYLFDVGVDEAGEYVFRVLALRLDGAMQVGQAAGYQISQVTVAGFAEVRLLDEFTEGSGVHGVSHTTGMVKKRRNIAGGARRLRRDCHNRFVVMRG |
| 3SQF Chain:A ((16-32)) | -----------------------------------------------------------------------------------------------LDD-KMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPFVIPNLPVNLWGRDLLSQMKI-------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3SQF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1937 for 41 contacts (-47.2/contact) +
2D Compatibility (PS) -1850 + (NN) -1010 + (LL) 7796
1D Compatibility (HY) -400 + (ID) 150
Total energy: 2449.0 ( 59.73 by residue)
QMean score : -0.129
|
|
|