Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITARKPPVPVAGR
3F7C Chain:A ((20-47))
------------------CAFLLALAERSFPNYALFADAVGLKTGGKMRQLLDLAWDMLQKDVADAAIPQLLSKLETLCPNVDEYDAYGVYPAFDFCQLLEQALLNRLNPNKHRATEASQLATRTVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLFQRDTVMALYYYRTPKEAFLAELRAG
General information:
TITO was launched using:
RESULT:
Template:
3F7C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6667 for 113 contacts (-59.0/contact) +
2D Compatibility (PS) -2973 + (NN) -1919 + (LL) 1696
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -12113.0 ( -107.19 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_3F7C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F7C-query.scw
PDB file :
Tito_Scwrl_3F7C.pdb
: