Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAF-----PINTLTLMR--GAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDE---FLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVG----DQLFFGQDRLDFVAEVLAG
3RPP Chain:A ((4-210))
LPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMK----KPPGLLPRKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGE
General information:
TITO was launched using:
RESULT:
Template:
3RPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119513 for 1436 contacts (-83.2/contact) +
2D Compatibility (PS) -20063 + (NN) -5632 + (LL) -56
1D Compatibility (HY) -14800 + (ID) 2650
Total energy: -162714.0 ( -113.31 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3RPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPP-query.scw
PDB file :
Tito_Scwrl_3RPP.pdb
: