Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQHDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQGGNLDYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWTLNGQVSERNGPQRI
5A9V Chain:A ((190-230))
-------------------------------------------------IVDHVPAPDVDLDGPFQMQISQLDYN------SYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLA
General information:
TITO was launched using:
RESULT:
Template:
5A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1926 for 170 contacts (-11.3/contact) +
2D Compatibility (PS) -4053 + (NN) 1337 + (LL) 4184
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -4408.0 ( -25.93 by residue)
QMean score : -0.317
(partial model without unconserved sides chains):
PDB file :
Tito_5A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A9V-query.scw
PDB file :
Tito_Scwrl_5A9V.pdb
: