Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVASKEPIMSQSERRFSFEFFPAKTEAGHEKLLATARNLAGYKPDFFSCTYGAGGSTRDRTLSTVLQLDGEVKVPTAPHLSCVGDSKAELRELLGRYREAGIRRIVALRGDLPSGMGMASGELRYANELVDFIRTETGDHFHIEVAAYPEVHPQARSFEDDLANFVRKVKAGASSAITQYFFNADAYFYFVERVAKLGVDIPVVPGIMPITNYSKLARFSDACGAELPRWIRKQLEAYGDDSRSIQAFGEQVISEMCERLLEGGAPGLHFYTLNQADPSLAIWKNLQLPR
1ZP4 Chain:A ((20-290))
----------QGQINVSFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYG-------RTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPG---PE---MYASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRP
General information:
TITO was launched using:
RESULT:
Template:
1ZP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166794 for 2098 contacts (-79.5/contact) +
2D Compatibility (PS) -28750 + (NN) -18093 + (LL) 1224
1D Compatibility (HY) -24000 + (ID) 5300
Total energy: -241713.0 ( -115.21 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_1ZP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZP4-query.scw
PDB file :
Tito_Scwrl_1ZP4.pdb
: