Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLSTWNLTIPQGRPAITISTSQLQRDYRSDYFQRTADG-IRFWVPVNGSHTRNSEFPRSELRETLS-SGRPYNWRYARADNWLEATLRIEAVPSTRRMIIGQIHSDGSNSGQAAPLVKLLYQLRLDQGRVQALVRERPDDGGTRAYTLMDGIPLGQPFSYRIGVSRSGLLSVSVNGSALEQQL---DPQWAYQGLYFKAGLYLQDNRGPSSEGGRAT--FSELRVSHQ
2ZAA Chain:A ((10-226))
--DLSHWKLQLPDAN-TTEISSANLGLGYTSQYFYTDTDGAMTFWAPTTGGTTANSSYPRSELREMLDPSNSKVNWGW-QGTHTMKLSGKTVQLPSSGKIIVAQINGIMDDGTNAPPLVKAVFQ----DGQLDMQVKQNSDGTGSDVHNYFTGIKLGDLYNMEIRVT-DGVAYVTMNGDTRSVDFVGKDAGWKNLKYYFKAGNFVQDN---TSTGGSAIAKLYSLSVSHS
General information:
TITO was launched using:
RESULT:
Template:
2ZAA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98870 for 1692 contacts (-58.4/contact) +
2D Compatibility (PS) -21937 + (NN) -6955 + (LL) 336
1D Compatibility (HY) -15200 + (ID) 3800
Total energy: -146426.0 ( -86.54 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_2ZAA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZAA-query.scw
PDB file :
Tito_Scwrl_2ZAA.pdb
: