Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKK-HTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEH--------FIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA
1D6J Chain:A ((17-202))
---------------RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVE--------------------------APYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL
General information:
TITO was launched using:
RESULT:
Template:
1D6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98829 for 1150 contacts (-85.9/contact) +
2D Compatibility (PS) -16683 + (NN) -7648 + (LL) 1452
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -137258.0 ( -119.35 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1D6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D6J-query.scw
PDB file :
Tito_Scwrl_1D6J.pdb
: