Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPVLPLLLSLSLCAPALA---DWSGPIEQPLWSLPAAPGLSRWLIVHNLSSAAADGLYHVEVLERRQGQQPWQFQRLAAHLALTEQALRASIVAPLKRGGVYPESYQFAYRQWQERQAAGQAPVCRRTVDECLRAPD
4RL1 Chain:A ((76-133))
---------SVRACEAAFAPYVDWS--VEQVLRDSPDAPGLDRVDVVQPTLFAV---MISLAALWRSQGVEPCAVLGHSLGEIAAAHVSGGLSLADAARVVTLWSQAQTTLAGTGALVSVAATPDELLPRIAPWTEDN
General information:
TITO was launched using:
RESULT:
Template:
4RL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22147 for 307 contacts (-72.1/contact) +
2D Compatibility (PS) -5972 + (NN) -4035 + (LL) 508
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -35996.0 ( -117.25 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_4RL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RL1-query.scw
PDB file :
Tito_Scwrl_4RL1.pdb
: