Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPFSERISRLKSSLIREILAAAQRPEVMSFAGGLPAEPMLP-----KVQWEQMPASMG---QYGMSEGEPALREAIA--AEARALGVPCEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDL-----VALRQRLERHKPAFAYLIPTFQNPSGVRYSEERRDAVAALLDEFGVTLIEDEPYRELVFDEGRATPLVSRLRK-SSWIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVRRDAMQEALLEHFGELAEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPFFAEPEQNLGRLRLNFSHVAPERLHEGLRRLAKVVRDAQAAEAA |
1WST Chain:A ((19-410)) | --FSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKR-YDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYS-GEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKK-NTMRLNFTYVPEETIREGVRRLAETIKEEMKRV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WST.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195382 for 3244 contacts (-60.2/contact) +
2D Compatibility (PS) -41795 + (NN) -31995 + (LL) 756
1D Compatibility (HY) -32800 + (ID) 7400
Total energy: -308616.0 ( -95.13 by residue)
QMean score : 0.480
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