Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
4F0W Chain:A ((37-188))
--SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
General information:
TITO was launched using:
RESULT:
Template:
4F0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101577 for 1300 contacts (-78.1/contact) +
2D Compatibility (PS) -16445 + (NN) -6822 + (LL) 132
1D Compatibility (HY) -19600 + (ID) 7550
Total energy: -151862.0 ( -116.82 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4F0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F0W-query.scw
PDB file :
Tito_Scwrl_4F0W.pdb
: