Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
4GDK Chain:B ((45-97))
LTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYP--IGLLFDLLA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4GDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1097 for 224 contacts (-4.9/contact) +
2D Compatibility (PS) -4624 + (NN) 987 + (LL) 1788
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -6646.0 ( -29.67 by residue)
QMean score : 0.123
(partial model without unconserved sides chains):
PDB file :
Tito_4GDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GDK-query.scw
PDB file :
Tito_Scwrl_4GDK.pdb
: