Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSNAQRALIKATVPLLETGGEALITHFYRTMLGEYPEVRPLFNQAHQASGDQPRALANGVLMYARHIDQLQELGPLVAKVVNKHVSLQVLPEHYPIVGTCLLRAIREVLGEQIATDEVLEAWGAAYQQLADLLIEAEESVYAASAQADGGWRGVRRFRVARKQAESEEITSFYLEPVDGQPL----LAFQPGQYIGLRLDIDGEEVR----RNYSLSAASNGREYRISVKREA------GGRVSNYLHDRVAEGDELDLFPPAGDF-----VLRDSDKPLVLITAGVGITPALAMLQEALP--QARPIRFIHCARHGGVHAFRDWIEDVSAQHEQVEHFFCYSEPRAGDSADAEGLLSREKLADWLPQERDLDAYFLGPRPFMAQVKRHLADLGVPSQQCHYEFFGPAAALDA |
| 4G1V Chain:A ((2-392)) | -LAEKTRSIIKATVPVLEQQGTVITRTFYKNMLTEHTELLNIFNRTNQKVGAQPNALATTVLAAAKNIDDLSVLMDHVKQIGHKHRALQIKPEHYPIVGEYLLKAIKEVLGDA-ATPEIINAWGEAYQAIADIFITVEKKMY-----EEALWPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPNRPIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHT--------DTEPLINAAFLKEKSPAHADV--YTCGSLAFMQAMIGHLKELEHRDDMIHYEPFGP------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249965 for 2929 contacts (-85.3/contact) +
2D Compatibility (PS) -39857 + (NN) -19653 + (LL) 1756
1D Compatibility (HY) -31600 + (ID) 7500
Total energy: -346819.0 ( -118.41 by residue)
QMean score : 0.514
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