Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAELILKVSSLTPEFKKELTRFIEQLLAAQGSTSRQPVRTRSEL
3VK0 Chain:A ((21-91))
VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSA----VERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLM---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30985 for 471 contacts (-65.8/contact) +
2D Compatibility (PS) -7778 + (NN) -2416 + (LL) 3528
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -42701.0 ( -90.66 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3VK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VK0-query.scw
PDB file :
Tito_Scwrl_3VK0.pdb
: