Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
4E5U Chain:A ((5-213))
-TGLFVTLEGPE----STNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAAR-RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
General information:
TITO was launched using:
RESULT:
Template:
4E5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83329 for 1557 contacts (-53.5/contact) +
2D Compatibility (PS) -23341 + (NN) -19737 + (LL) -100
1D Compatibility (HY) -26000 + (ID) 10200
Total energy: -162707.0 ( -104.50 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_4E5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E5U-query.scw
PDB file :
Tito_Scwrl_4E5U.pdb
: