Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVV-LADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYL-RAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDT---REAAEREA--------APLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
2DTE Chain:A ((9-247))
----------KVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP------GEAKYDH---IECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIES--YGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH-EHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS-------
General information:
TITO was launched using:
RESULT:
Template:
2DTE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141585 for 1957 contacts (-72.3/contact) +
2D Compatibility (PS) -24232 + (NN) -8480 + (LL) 1700
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -196247.0 ( -100.28 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2DTE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTE-query.scw
PDB file :
Tito_Scwrl_2DTE.pdb
: