Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWLLGEQRD-G---HWRFRADSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG
3LVL Chain:A ((33-122))
-----------------------------------------------VGAPACGDVMKLQIKVNDEGIIEDARFKTYG-CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE----LPPVKIHCSILAEDAIKAAIADY--
General information:
TITO was launched using:
RESULT:
Template:
3LVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70367 for 647 contacts (-108.8/contact) +
2D Compatibility (PS) -9386 + (NN) -5440 + (LL) 4372
1D Compatibility (HY) 2000 + (ID) 650
Total energy: -79471.0 ( -122.83 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3LVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LVL-query.scw
PDB file :
Tito_Scwrl_3LVL.pdb
: