Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFSWSEILLELLAVAVLFFGVHWSLRHAKTLDQASMLPFADDEEVARRVERETGRSRTGCGCPGRCQGDCRHWDKNWPA
2HM3 Chain:A ((7-18))
-------------------------------------------------------------TCPSGCSGDCYP-------
General information:
TITO was launched using:
RESULT:
Template:
2HM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3365 for 41 contacts (-82.1/contact) +
2D Compatibility (PS) -1430 + (NN) -2878 + (LL) 5704
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -3469.0 ( -84.61 by residue)
QMean score : 1.386
(partial model without unconserved sides chains):
PDB file :
Tito_2HM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HM3-query.scw
PDB file :
Tito_Scwrl_2HM3.pdb
: