Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSPFSPRSPRTLRGLGALALCGGFVAPAPAAFLEDGSARLEARTVYFNRDFRDGSSANPQGASKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIKLDSSPADSNSGL-----LPSSGHDPRRSVDQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTARDSSDAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAG-----AARA---------------GKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYL-----DGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF |
4FRX Chain:A ((7-437)) | ------------------------------AGFIEDSKASLTLRNFYINTDNR----------SKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRL-----------GTVFPLESNGE----PVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTARGDQ-SEWERDISLAYVIPDGTFKGLGFTWKNASFRSG------DQDENRLIVSYTLPLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FRX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18310 for 2815 contacts (-6.5/contact) +
2D Compatibility (PS) -36983 + (NN) 4541 + (LL) 592
1D Compatibility (HY) -33600 + (ID) 8450
Total energy: -92210.0 ( -32.76 by residue)
QMean score : 0.203
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