Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIKLVYSVRESKELAYRELIA-GLAEREYLAEHA-HKLQFIPVVTREQVPGCLNGRITTLIENGDLERAADL-ELTPEHSRVMLCGNPQMIEDTRAVLKARGMNLSLTRRPGQVAVENYW
4B4D Chain:A ((8-244))
-------FGAETVLEVRHWTDAYFSFTTTRDAGFRFENGQFVMIGLETETRPLL-RAYSIASANWEEHLEFFSIKVPDGPLTSRLQHIQPGDKVLVGKKPTGTLLISDLHPGRNLYLLGTGTGLAPWLSIIKDPETYERFDKVILTQGVRFVQDLAYRDYFERELPQHEFLGDLLREKLLYYPAVTRETFAN--QGRLTELMADGRMQQTLGLPTLDPANDRFMICGSPQMLADLRSLLDSRGFQTS--------------
General information:
TITO was launched using:
RESULT:
Template:
4B4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180686 for 1894 contacts (-95.4/contact) +
2D Compatibility (PS) -25106 + (NN) -4679 + (LL) 2072
1D Compatibility (HY) -23600 + (ID) 4950
Total energy: -236949.0 ( -125.11 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4B4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B4D-query.scw
PDB file :
Tito_Scwrl_4B4D.pdb
: